HHsearch alignment for GI: 254780693 and conserved domain: PRK05657

>PRK05657 RNA polymerase sigma factor RpoS; Validated.

Probab=96.31  E-value=0.048  Score=33.77  Aligned_cols=48  Identities=21%  Similarity=0.298  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             4998999999999-----87999789999949998899999999999807997
Q gi|254780693|r  173 NLTERETSCLQLA-----GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN  220 (235)
Q Consensus       173 ~LT~RE~evL~l~-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~n  220 (235)
T Consensus       265 ~L~~REr~II~~RfGL~~~e~~TL~EIg~~lgvSRERVRQIE~~AL~KLR~~l  317 (328)
T PRK05657        265 ELNDKQREVIERRFGLNGYEAATLEEVAREIGLTRERVRQIQVEALRRLREIL  317 (328)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             69999999999980889989605999998969799999999999999987999