HHsearch alignment for GI: 254780693 and conserved domain: PRK05901

>PRK05901 RNA polymerase sigma factor; Provisional.
Probab=96.07  E-value=0.024  Score=35.91  Aligned_cols=52  Identities=25%  Similarity=0.371  Sum_probs=46.7

Q ss_pred             CCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             4998999999999-----879997899999499988999999999998079978999
Q gi|254780693|r  173 NLTERETSCLQLA-----GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA  224 (235)
Q Consensus       173 ~LT~RE~evL~l~-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qa  224 (235)
T Consensus       335 ~L~~REr~Ii~~RyGL~~~~~~TL~eIg~~lgvSrERVRQIE~kAL~KLR~~~~~~~  391 (398)
T PRK05901        335 TLSEREAGVIRMRFGLTDGQPKTLDEIGQVYGVTRERIRQIESKTMRKLRHPSRSQV  391 (398)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             899999999999758999896039999989796999999999999999678378879