HHsearch alignment for GI: 254780693 and conserved domain: PRK05901
>PRK05901 RNA polymerase sigma factor; Provisional.
Probab=96.07 E-value=0.024 Score=35.91 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 4998999999999-----879997899999499988999999999998079978999
Q gi|254780693|r 173 NLTERETSCLQLA-----GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 (235)
Q Consensus 173 ~LT~RE~evL~l~-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qa 224 (235)
T Consensus 335 ~L~~REr~Ii~~RyGL~~~~~~TL~eIg~~lgvSrERVRQIE~kAL~KLR~~~~~~~ 391 (398)
T PRK05901 335 TLSEREAGVIRMRFGLTDGQPKTLDEIGQVYGVTRERIRQIESKTMRKLRHPSRSQV 391 (398)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 899999999999758999896039999989796999999999999999678378879