HHsearch alignment for GI: 254780693 and conserved domain: PRK06986

>PRK06986 fliA flagellar biosynthesis sigma factor; Validated.
Probab=96.66  E-value=0.0058  Score=40.31  Aligned_cols=45  Identities=31%  Similarity=0.338  Sum_probs=41.0

Q ss_pred             CCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             49989999999998-7999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLAG-DGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~a-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       183 ~L~~rEr~Ii~l~y~~~~tl~eIa~~lgiS~eRVrQie~~AL~kLR  228 (234)
T PRK06986        183 KLPEREQLVLSLYYDEELNLKEIGAVLGVSESRVSQIHSQAIKRLR  228 (234)
T ss_pred             HCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             0999999999987389989999999979789999999999999999