HHsearch alignment for GI: 254780693 and conserved domain: PRK07598
>PRK07598 RNA polymerase sigma factor SigC; Validated.
Probab=96.02 E-value=0.031 Score=35.06 Aligned_cols=53 Identities=32% Similarity=0.412 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 4998999999999-----8799978999994999889999999999980799789999
Q gi|254780693|r 173 NLTERETSCLQLA-----GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 (235)
Q Consensus 173 ~LT~RE~evL~l~-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qav 225 (235)
T Consensus 345 ~L~~REr~IL~lRfGL~dg~~~TL~EIG~~lgISRERVRQIE~kAL~KLR~p~r~~~L 402 (410)
T PRK07598 345 DLTSRERDVIRMRFGLADGRTYSLAEIGRALDLSRERVRQIEAKALQKLRQPKRRNRI 402 (410)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 6999999999996489997966899999897969999999999999996773778999