HHsearch alignment for GI: 254780693 and conserved domain: PRK08241
>PRK08241 RNA polymerase factor sigma-70; Validated.
Probab=96.56 E-value=0.017 Score=36.96 Aligned_cols=46 Identities=35% Similarity=0.454 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 4998999999999-879997899999499988999999999998079
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~ 218 (235)
T Consensus 156 ~Lpp~QRavlvLRdV~g~s~~EiAe~Lg~S~aAVks~L~RARa~L~~ 202 (341)
T PRK08241 156 HLPPRQRAVLLLRDVLGWSAAEVAEALGTSTAAVNSALQRARATLAE 202 (341)
T ss_pred HCCHHHHEEEEHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 39997902001297529988999999789999999999999999986