HHsearch alignment for GI: 254780693 and conserved domain: PRK08241

>PRK08241 RNA polymerase factor sigma-70; Validated.
Probab=96.56  E-value=0.017  Score=36.96  Aligned_cols=46  Identities=35%  Similarity=0.454  Sum_probs=42.0

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf             4998999999999-879997899999499988999999999998079
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA  218 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~  218 (235)
T Consensus       156 ~Lpp~QRavlvLRdV~g~s~~EiAe~Lg~S~aAVks~L~RARa~L~~  202 (341)
T PRK08241        156 HLPPRQRAVLLLRDVLGWSAAEVAEALGTSTAAVNSALQRARATLAE  202 (341)
T ss_pred             HCCHHHHEEEEHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             39997902001297529988999999789999999999999999986