HHsearch alignment for GI: 254780693 and conserved domain: PRK08301
>PRK08301 sporulation sigma factor SigE; Reviewed.
Probab=96.74 E-value=0.0041 Score=41.38 Aligned_cols=45 Identities=27% Similarity=0.458 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 44998999999999-----8799978999994999889999999999980
Q gi|254780693|r 172 RNLTERETSCLQLA-----GDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 172 ~~LT~RE~evL~l~-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
T Consensus 182 ~~L~eREr~Ii~lRfGL~~~~~~Tl~EIa~~lgISrerVrQIe~~AL~KL 231 (239)
T PRK08301 182 KKLNDREKQIMELRFGLAGGEEKTQKEVADMLGISQSYISRLEKRIIKRL 231 (239)
T ss_pred HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 64899999999999578899840699999998978999999999999999