HHsearch alignment for GI: 254780693 and conserved domain: PRK08583
>PRK08583 RNA polymerase sigma factor SigB; Validated.
Probab=97.10 E-value=0.0015 Score=44.45 Aligned_cols=46 Identities=30% Similarity=0.373 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 44998999999999-87999789999949998899999999999807
Q gi|254780693|r 172 RNLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 172 ~~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 204 ~~L~erEr~Ii~lry~~~~t~~eIa~~lGiS~eRVrQi~~~Al~kLR 250 (257)
T PRK08583 204 PVLSDREKSIIQCTFIENLSQKETGERLGISQMHVSRLQRQAIKKLR 250 (257)
T ss_pred HCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 54999999999999579999999999989699999999999999987