HHsearch alignment for GI: 254780693 and conserved domain: PRK08583

>PRK08583 RNA polymerase sigma factor SigB; Validated.
Probab=97.10  E-value=0.0015  Score=44.45  Aligned_cols=46  Identities=30%  Similarity=0.373  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             44998999999999-87999789999949998899999999999807
Q gi|254780693|r  172 RNLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       172 ~~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       204 ~~L~erEr~Ii~lry~~~~t~~eIa~~lGiS~eRVrQi~~~Al~kLR  250 (257)
T PRK08583        204 PVLSDREKSIIQCTFIENLSQKETGERLGISQMHVSRLQRQAIKKLR  250 (257)
T ss_pred             HCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             54999999999999579999999999989699999999999999987