HHsearch alignment for GI: 254780693 and conserved domain: PRK09415

>PRK09415 RNA polymerase factor sigma C; Reviewed.

Probab=97.69  E-value=0.00012  Score=52.26  Aligned_cols=45  Identities=22%  Similarity=0.228  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       127 ~L~~~~r~ii~l~~~~~~s~~EIA~~l~is~~tV~~rl~Rark~Lr  172 (177)
T PRK09415        127 SLPIKYREVIYLFYYEELSIKEIATVTGVNENTIKTRLKKAKELLK  172 (177)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             6999999999999980998999999889299999999999999999