HHsearch alignment for GI: 254780693 and conserved domain: PRK09642
>PRK09642 RNA polymerase sigma factor SigW; Reviewed.
Probab=97.66 E-value=0.00014 Score=51.79 Aligned_cols=45 Identities=22% Similarity=0.141 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999-87999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 106 ~Lp~~~R~v~~L~~~e~~s~~EIA~~l~is~~tVk~~l~RArk~Lk 151 (160)
T PRK09642 106 ELPENYRDVVLAHYLEEKSYQEIALQENIEVKTVEMKLYRARKWIK 151 (160)
T ss_pred HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 7999999997999982999999999989199999999999999999