HHsearch alignment for GI: 254780693 and conserved domain: PRK09643
>PRK09643 RNA polymerase sigma factor SigM; Reviewed.
Probab=97.86 E-value=4.4e-05 Score=55.38 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 499899999999-987999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 131 ~Lp~~~R~vl~L~~~eg~s~~EIA~~lgis~~tVKsrl~RAr~~Lr 176 (197)
T PRK09643 131 RLPVEQRAALVAVDMQGYSVADTARMLGVAEGTVKSRCARGRARLA 176 (197)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 6999887999999981999999999989399999999999999999