HHsearch alignment for GI: 254780693 and conserved domain: PRK09643

>PRK09643 RNA polymerase sigma factor SigM; Reviewed.
Probab=97.86  E-value=4.4e-05  Score=55.38  Aligned_cols=45  Identities=22%  Similarity=0.332  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             499899999999-987999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       131 ~Lp~~~R~vl~L~~~eg~s~~EIA~~lgis~~tVKsrl~RAr~~Lr  176 (197)
T PRK09643        131 RLPVEQRAALVAVDMQGYSVADTARMLGVAEGTVKSRCARGRARLA  176 (197)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             6999887999999981999999999989399999999999999999