HHsearch alignment for GI: 254780693 and conserved domain: PRK09644

>PRK09644 RNA polymerase sigma factor SigM; Provisional.
Probab=97.75  E-value=7.3e-05  Score=53.83  Aligned_cols=45  Identities=27%  Similarity=0.210  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       108 ~Lp~~~r~v~~L~~~~~~s~~EIA~~l~is~~tVk~rl~RAr~~Lr  153 (165)
T PRK09644        108 TLPVIEAQAILLCDVHELTYEEAASVLDLKENTYKSHLFRGRKRLK  153 (165)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             2999999999999998889999999989399999999999999999