HHsearch alignment for GI: 254780693 and conserved domain: PRK09644
>PRK09644 RNA polymerase sigma factor SigM; Provisional.
Probab=97.75 E-value=7.3e-05 Score=53.83 Aligned_cols=45 Identities=27% Similarity=0.210 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999-87999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 108 ~Lp~~~r~v~~L~~~~~~s~~EIA~~l~is~~tVk~rl~RAr~~Lr 153 (165)
T PRK09644 108 TLPVIEAQAILLCDVHELTYEEAASVLDLKENTYKSHLFRGRKRLK 153 (165)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 2999999999999998889999999989399999999999999999