HHsearch alignment for GI: 254780693 and conserved domain: PRK09647

>PRK09647 RNA polymerase sigma factor SigE; Reviewed.

Probab=97.80  E-value=6.1e-05  Score=54.40  Aligned_cols=46  Identities=26%  Similarity=0.340  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             44998999999999-87999789999949998899999999999807
Q gi|254780693|r  172 RNLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       172 ~~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       156 ~~Lp~~qR~vl~Lr~~eglS~~EIAe~Lgis~gTVKsrl~RAr~~LR  202 (222)
T PRK09647        156 DSLPPEFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSRIHRGRQALR  202 (222)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             82999998899879963999999999989399999999999999999