HHsearch alignment for GI: 254780693 and conserved domain: PRK09651
>PRK09651 RNA polymerase sigma factor FecI; Provisional.
Probab=97.96 E-value=2.2e-05 Score=57.48 Aligned_cols=45 Identities=33% Similarity=0.482 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 4499899999999-98799978999994999889999999999980
Q gi|254780693|r 172 RNLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 172 ~~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
T Consensus 118 ~~Lp~~~R~v~~L~~~egls~~EIA~~lgiS~~tVk~~l~rAlk~c 163 (172)
T PRK09651 118 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 163 (172)
T ss_pred HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 7099999999999988399999999998939999999999999999