HHsearch alignment for GI: 254780693 and conserved domain: PRK09651

>PRK09651 RNA polymerase sigma factor FecI; Provisional.
Probab=97.96  E-value=2.2e-05  Score=57.48  Aligned_cols=45  Identities=33%  Similarity=0.482  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             4499899999999-98799978999994999889999999999980
Q gi|254780693|r  172 RNLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL  216 (235)
Q Consensus       172 ~~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  216 (235)
T Consensus       118 ~~Lp~~~R~v~~L~~~egls~~EIA~~lgiS~~tVk~~l~rAlk~c  163 (172)
T PRK09651        118 DGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC  163 (172)
T ss_pred             HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             7099999999999988399999999998939999999999999999