HHsearch alignment for GI: 254780693 and conserved domain: PRK09652

>PRK09652 RNA polymerase sigma factor RpoE; Provisional.
Probab=97.96  E-value=2.1e-05  Score=57.63  Aligned_cols=45  Identities=31%  Similarity=0.373  Sum_probs=42.6

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       137 ~L~~~~r~v~~l~~~~~~s~~EIA~~lgis~~tVk~~l~Ra~~~Lr  182 (192)
T PRK09652        137 SLPEELRTAITLREIEGLSYEEIAEIMGCPIGTVRSRIFRAREALR  182 (192)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             3999999888899972999999999989399999999999999999