HHsearch alignment for GI: 254780693 and conserved domain: PRK10651
>PRK10651 transcriptional regulator NarL; Provisional.
Probab=99.72 E-value=5.7e-17 Score=140.12 Aligned_cols=63 Identities=24% Similarity=0.298 Sum_probs=60.5
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 444998999999999879997899999499988999999999998079978999999997699
Q gi|254780693|r 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gl 233 (235)
T Consensus 153 ~~~LT~RE~eVL~ll~~G~snkeIA~~L~iS~~TV~~h~~~i~~KLgv~nr~ea~~~a~~~~l 215 (216)
T PRK10651 153 VNQLTPRERDILKLIAQGLSNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERI 215 (216)
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 234898999999999859999999999697899999999999998489999999999998369