HHsearch alignment for GI: 254780693 and conserved domain: PRK11475
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional.
Probab=99.50 E-value=2.7e-13 Score=113.95 Aligned_cols=62 Identities=24% Similarity=0.286 Sum_probs=57.4
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 74449989999999998799978999994999889999999999980799789999999976
Q gi|254780693|r 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 (235)
Q Consensus 170 ~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~ 231 (235)
T Consensus 131 ~~~~Lt~rE~eVl~l~a~G~s~~eIA~~L~~S~kTv~thr~~~m~KLgv~s~a~Li~~a~~~ 192 (205)
T PRK11475 131 QSRMLSPTEREILRFMSRGYSMPQIAEQLERNIKTIRAHKFNVMSKLGVSSDAGLLDAADIL 192 (205)
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 67889858999999997699999999997888889999999999982999879999999999