HHsearch alignment for GI: 254780693 and conserved domain: PRK11924

>PRK11924 RNA polymerase sigma factor; Provisional.

Probab=97.81  E-value=5.5e-05  Score=54.73  Aligned_cols=45  Identities=33%  Similarity=0.495  Sum_probs=42.5

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       125 ~L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~l~Ra~~~Lr  170 (180)
T PRK11924        125 ALPEKQREVFLLRYVEGLSYQEIADQLGVPLGTVKSRLRRARQKLR  170 (180)
T ss_pred             HCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             5999999999999996859999999989499999999999999999