HHsearch alignment for GI: 254780693 and conserved domain: PRK12427

>PRK12427 flagellar biosynthesis sigma factor; Provisional.

Probab=96.94  E-value=0.0022  Score=43.23  Aligned_cols=47  Identities=26%  Similarity=0.285  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf             4499899999999-9879997899999499988999999999998079
Q gi|254780693|r  172 RNLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA  218 (235)
Q Consensus       172 ~~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~  218 (235)
T Consensus       180 ~~L~erEr~Vi~l~y~e~ltlkEIa~~LgvS~~RVsQi~~kal~kLR~  227 (229)
T PRK12427        180 SQLDEREQMILHLYYQQELSMKEIAQVLDLTEARICQLNKKLVQKIKS  227 (229)
T ss_pred             HHCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             719999999999980589989999999798899999999999999884