HHsearch alignment for GI: 254780693 and conserved domain: PRK12511
>PRK12511 RNA polymerase sigma factor; Provisional.
Probab=97.73 E-value=3.6e-05 Score=56.04 Aligned_cols=45 Identities=29% Similarity=0.482 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999-87999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 111 ~Lp~~~R~vl~L~~~egls~~EIAe~Lgis~gTVKsrl~RAr~~LR 156 (182)
T PRK12511 111 DLPEEQRAALHLVAIEGLSYQEAANVLGIPIGTLMSRIGRARAALR 156 (182)
T ss_pred CCCHHHHHHEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 6999895011241007999999999989399999999999999999