HHsearch alignment for GI: 254780693 and conserved domain: PRK12513

>PRK12513 RNA polymerase sigma factor; Provisional.

Probab=97.82  E-value=5.7e-05  Score=54.60  Aligned_cols=45  Identities=29%  Similarity=0.361  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             499899999999-987999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       139 ~Lp~~~r~il~L~~~~g~s~~EIA~~l~is~~tVk~~l~rA~~~Lr  184 (194)
T PRK12513        139 TLPDEQREVFLLREHGDLSLEEIAQLTGVPLETVKSRLRYALQKLR  184 (194)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             2998999999999984999999999989499999999999999999