HHsearch alignment for GI: 254780693 and conserved domain: PRK12516

>PRK12516 RNA polymerase sigma factor; Provisional.
Probab=97.91  E-value=3e-05  Score=56.61  Aligned_cols=45  Identities=27%  Similarity=0.451  Sum_probs=41.9

Q ss_pred             CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             499899999999-987999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       119 ~Lp~~~R~vl~L~~~egls~~EIAe~Lgis~~TVksrl~RAr~~Lr  164 (190)
T PRK12516        119 QLPDDQREAIILIGASGFAYEEAAEICGCAVGTIKSRVSRARARLQ  164 (190)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             1999998999989982999999999989499999999999999999