HHsearch alignment for GI: 254780693 and conserved domain: PRK12516
>PRK12516 RNA polymerase sigma factor; Provisional.
Probab=97.91 E-value=3e-05 Score=56.61 Aligned_cols=45 Identities=27% Similarity=0.451 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 499899999999-987999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 119 ~Lp~~~R~vl~L~~~egls~~EIAe~Lgis~~TVksrl~RAr~~Lr 164 (190)
T PRK12516 119 QLPDDQREAIILIGASGFAYEEAAEICGCAVGTIKSRVSRARARLQ 164 (190)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 1999998999989982999999999989499999999999999999