HHsearch alignment for GI: 254780693 and conserved domain: PRK12518

>PRK12518 RNA polymerase sigma factor; Provisional.

Probab=97.72  E-value=9.8e-05  Score=52.92  Aligned_cols=45  Identities=31%  Similarity=0.301  Sum_probs=42.0

Q ss_pred             CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             499899999999-987999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       120 ~Lp~~~r~vi~l~~~~~~s~~EIA~~l~is~~tVk~~l~Ra~k~Lr  165 (175)
T PRK12518        120 TLSLEHRAVLVLHDLEDLPQKEIAEILNIPVGTVKSRLFYARRQLR  165 (175)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             6999999999999992999999999989599999999999999999