HHsearch alignment for GI: 254780693 and conserved domain: PRK12520

>PRK12520 RNA polymerase sigma factor; Provisional.
Probab=97.74  E-value=7.8e-05  Score=53.61  Aligned_cols=45  Identities=20%  Similarity=0.273  Sum_probs=42.5

Q ss_pred             CCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             49989999999998-7999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLAG-DGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~a-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       131 ~Lp~~~R~v~~Lr~~~~ls~~EIA~~l~~s~~tVk~~l~RAR~~Lr  176 (191)
T PRK12520        131 RLPARTGRVFMMREWLELETEEICKELQITATNLWVMLYRARLRLR  176 (191)
T ss_pred             HCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             7749999999999993899999999989499999999999999999