HHsearch alignment for GI: 254780693 and conserved domain: PRK12520
>PRK12520 RNA polymerase sigma factor; Provisional.
Probab=97.74 E-value=7.8e-05 Score=53.61 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 49989999999998-7999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAG-DGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 131 ~Lp~~~R~v~~Lr~~~~ls~~EIA~~l~~s~~tVk~~l~RAR~~Lr 176 (191)
T PRK12520 131 RLPARTGRVFMMREWLELETEEICKELQITATNLWVMLYRARLRLR 176 (191)
T ss_pred HCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 7749999999999993899999999989499999999999999999