HHsearch alignment for GI: 254780693 and conserved domain: PRK12524
>PRK12524 RNA polymerase sigma factor; Provisional.
Probab=97.93 E-value=2.7e-05 Score=56.95 Aligned_cols=46 Identities=26% Similarity=0.376 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 44998999999999-87999789999949998899999999999807
Q gi|254780693|r 172 RNLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 172 ~~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 135 ~~Lp~~~R~vi~L~~~eg~s~~EIA~~lgis~~tVk~~l~Rark~Lr 181 (196)
T PRK12524 135 AALPERQRQAVVLRHIEGLSNPEIAEVMQIGVEAVESLTARGKRALA 181 (196)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 85999999998999980899999999989299999999999999999