HHsearch alignment for GI: 254780693 and conserved domain: PRK12524

>PRK12524 RNA polymerase sigma factor; Provisional.
Probab=97.93  E-value=2.7e-05  Score=56.95  Aligned_cols=46  Identities=26%  Similarity=0.376  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             44998999999999-87999789999949998899999999999807
Q gi|254780693|r  172 RNLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       172 ~~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       135 ~~Lp~~~R~vi~L~~~eg~s~~EIA~~lgis~~tVk~~l~Rark~Lr  181 (196)
T PRK12524        135 AALPERQRQAVVLRHIEGLSNPEIAEVMQIGVEAVESLTARGKRALA  181 (196)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             85999999998999980899999999989299999999999999999