HHsearch alignment for GI: 254780693 and conserved domain: PRK12527

>PRK12527 RNA polymerase sigma factor; Reviewed.

Probab=98.07  E-value=1e-05  Score=59.89  Aligned_cols=46  Identities=24%  Similarity=0.265  Sum_probs=42.8

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf             4998999999999-879997899999499988999999999998079
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA  218 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~  218 (235)
T Consensus       105 ~Lp~~~R~v~~L~~~egls~~EIA~~lgis~~tVk~~l~rA~k~Lr~  151 (159)
T PRK12527        105 ELPPICRESFLLRKLEGLSHQQIAEHLGISRSLVEKHIVNAMKHCRV  151 (159)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             69999989998898739799999999891999999999999999999