HHsearch alignment for GI: 254780693 and conserved domain: PRK12529
>PRK12529 RNA polymerase sigma factor; Provisional.
Probab=97.91 E-value=3.1e-05 Score=56.45 Aligned_cols=44 Identities=30% Similarity=0.453 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 44998999999999-879997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
T Consensus 126 ~~Lp~r~R~vF~L~r~eGls~~EIAe~LgiS~~tV~~~l~rAl~~ 170 (178)
T PRK12529 126 DTLRPRVKQAFLMATLDGMKQKDIAQALDIALPTVKKYIHQAYVT 170 (178)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 569978889987998829999999999895999999999999999