HHsearch alignment for GI: 254780693 and conserved domain: PRK12530
>PRK12530 RNA polymerase sigma factor; Provisional.
Probab=97.55 E-value=0.00025 Score=49.98 Aligned_cols=45 Identities=16% Similarity=0.247 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999-87999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 136 ~LP~~~R~v~~Lr~~~~ls~~EIA~~l~is~~tVksrL~RAR~~Lr 181 (191)
T PRK12530 136 KLPAQQARVFMMREFLELSSEQICQECHITTSNLHVLLYRARLQLQ 181 (191)
T ss_pred HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 6999999999999992999999999989699999999999999999