HHsearch alignment for GI: 254780693 and conserved domain: PRK12530

>PRK12530 RNA polymerase sigma factor; Provisional.
Probab=97.55  E-value=0.00025  Score=49.98  Aligned_cols=45  Identities=16%  Similarity=0.247  Sum_probs=41.9

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       136 ~LP~~~R~v~~Lr~~~~ls~~EIA~~l~is~~tVksrL~RAR~~Lr  181 (191)
T PRK12530        136 KLPAQQARVFMMREFLELSSEQICQECHITTSNLHVLLYRARLQLQ  181 (191)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             6999999999999992999999999989699999999999999999