HHsearch alignment for GI: 254780693 and conserved domain: PRK12531
>PRK12531 RNA polymerase sigma factor; Provisional.
Probab=97.79 E-value=6.6e-05 Score=54.17 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHH-HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 449989999999-9987999789999949998899999999999807
Q gi|254780693|r 172 RNLTERETSCLQ-LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 172 ~~LT~RE~evL~-l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 140 ~~Lp~~~R~vi~L~~~e~~s~~EIAe~l~is~~TVKsrl~rA~k~LR 186 (194)
T PRK12531 140 DRLPKAQRDVLQAVYLEELPHQQVAEMFDIPLGTVKSRLRLAVEKLR 186 (194)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 86999999999999886999999999989299999999999999999