HHsearch alignment for GI: 254780693 and conserved domain: PRK12531

>PRK12531 RNA polymerase sigma factor; Provisional.
Probab=97.79  E-value=6.6e-05  Score=54.17  Aligned_cols=46  Identities=24%  Similarity=0.302  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHH-HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             449989999999-9987999789999949998899999999999807
Q gi|254780693|r  172 RNLTERETSCLQ-LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       172 ~~LT~RE~evL~-l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       140 ~~Lp~~~R~vi~L~~~e~~s~~EIAe~l~is~~TVKsrl~rA~k~LR  186 (194)
T PRK12531        140 DRLPKAQRDVLQAVYLEELPHQQVAEMFDIPLGTVKSRLRLAVEKLR  186 (194)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             86999999999999886999999999989299999999999999999