HHsearch alignment for GI: 254780693 and conserved domain: PRK12533
>PRK12533 RNA polymerase sigma factor; Provisional.
Probab=97.76 E-value=8e-05 Score=53.56 Aligned_cols=45 Identities=27% Similarity=0.222 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999-87999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 137 ~Lp~~~R~vl~Lr~~eglS~~EIAeiLgip~gTVKSRL~RAR~~Lr 182 (217)
T PRK12533 137 KLPVEYREVLVLRELEDMSYREIAAIADVPVGTVMSRLARARRRLA 182 (217)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 0999886899999980999999999989499999999999999999