HHsearch alignment for GI: 254780693 and conserved domain: PRK12535

>PRK12535 RNA polymerase sigma factor; Provisional.
Probab=97.64  E-value=0.00014  Score=51.74  Aligned_cols=45  Identities=29%  Similarity=0.302  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       132 ~Lp~~~R~~l~L~~~~g~s~~EIA~ilgi~~gTVKsRl~RAr~~Lr  177 (195)
T PRK12535        132 ALPPERREALILTQVLGYTYEEAAKIADVRVGTIRSRVARARADLV  177 (195)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             4999887999999982998999999989399999999999999999