HHsearch alignment for GI: 254780693 and conserved domain: PRK12535
>PRK12535 RNA polymerase sigma factor; Provisional.
Probab=97.64 E-value=0.00014 Score=51.74 Aligned_cols=45 Identities=29% Similarity=0.302 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999-87999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 132 ~Lp~~~R~~l~L~~~~g~s~~EIA~ilgi~~gTVKsRl~RAr~~Lr 177 (195)
T PRK12535 132 ALPPERREALILTQVLGYTYEEAAKIADVRVGTIRSRVARARADLV 177 (195)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 4999887999999982998999999989399999999999999999