HHsearch alignment for GI: 254780693 and conserved domain: PRK12536

>PRK12536 RNA polymerase sigma factor; Provisional.

Probab=97.73  E-value=9.4e-05  Score=53.06  Aligned_cols=45  Identities=24%  Similarity=0.256  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       126 ~Lp~~~R~~~~l~~~eg~s~~EIA~~lgis~~tVk~rl~Ra~k~Lr  171 (178)
T PRK12536        126 QLPDRQRLPIVHVKLEGLSVEETAQLTGLSESAVKVGIHRGLKALA  171 (178)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             6999899999999885999999999989299999999999999999