HHsearch alignment for GI: 254780693 and conserved domain: PRK12539

>PRK12539 RNA polymerase sigma factor; Provisional.
Probab=97.76  E-value=7.9e-05  Score=53.57  Aligned_cols=46  Identities=24%  Similarity=0.268  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4499899999999-987999789999949998899999999999807
Q gi|254780693|r  172 RNLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       172 ~~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       130 ~~Lp~~~r~v~~L~~~eg~s~~EIA~~lgis~~tVks~l~Rark~Lr  176 (184)
T PRK12539        130 ARLPEKMRLAIQAVKLDGLSVAEAATRSGMSESAVKVSVHRGLKALA  176 (184)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             84999999999999994999999999989199999999999999999