HHsearch alignment for GI: 254780693 and conserved domain: PRK12539
>PRK12539 RNA polymerase sigma factor; Provisional.
Probab=97.76 E-value=7.9e-05 Score=53.57 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4499899999999-987999789999949998899999999999807
Q gi|254780693|r 172 RNLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 172 ~~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 130 ~~Lp~~~r~v~~L~~~eg~s~~EIA~~lgis~~tVks~l~Rark~Lr 176 (184)
T PRK12539 130 ARLPEKMRLAIQAVKLDGLSVAEAATRSGMSESAVKVSVHRGLKALA 176 (184)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 84999999999999994999999999989199999999999999999