HHsearch alignment for GI: 254780693 and conserved domain: PRK12542

>PRK12542 RNA polymerase sigma factor; Provisional.

Probab=97.81  E-value=5.4e-05  Score=54.75  Aligned_cols=44  Identities=18%  Similarity=0.272  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             49989999999998-799978999994999889999999999980
Q gi|254780693|r  173 NLTERETSCLQLAG-DGYTSEEIAEKLGLSVHTVNAYLGSATVKL  216 (235)
Q Consensus       173 ~LT~RE~evL~l~a-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  216 (235)
T Consensus       122 ~Lp~~~R~v~~L~~~~gls~~EIA~~L~is~~tVk~rl~RArk~L  166 (185)
T PRK12542        122 ELNESNRQVFKYKVFYNLTYQEISSVMGITEANVRKQFERARKRV  166 (185)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             299988899767998399999999998929999999999999999