HHsearch alignment for GI: 254780693 and conserved domain: PRK12543

>PRK12543 RNA polymerase sigma factor; Provisional.

Probab=97.90  E-value=3.6e-05  Score=56.05  Aligned_cols=44  Identities=27%  Similarity=0.359  Sum_probs=41.9

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             4998999999999-8799978999994999889999999999980
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKL  216 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  216 (235)
T Consensus       129 ~Lp~~~R~vi~L~~~~g~s~~EIA~~l~is~~tVk~rl~rA~k~L  173 (190)
T PRK12543        129 KLPYKLKQVIILRYLHDYSQEEVAQILHIPIGTVKSRIHAALKKL  173 (190)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             499999999999998599999999998939999999999999999