HHsearch alignment for GI: 254780693 and conserved domain: PRK12545

>PRK12545 RNA polymerase sigma factor; Provisional.

Probab=97.24  E-value=0.0057  Score=40.36  Aligned_cols=45  Identities=18%  Similarity=0.250  Sum_probs=40.6

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       139 ~LP~~~R~v~~Lr~~egls~~EIA~~L~is~~tVksrL~RAR~~LR  184 (201)
T PRK12545        139 HLPEQIGRVFMMREFLDFEIDDICTELTLTANHCSVLLYRARTRLR  184 (201)
T ss_pred             HCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             5999998898999992898999999989699999999999999999