HHsearch alignment for GI: 254780693 and conserved domain: PRK13558
>PRK13558 bacterio-opsin activator; Provisional.
Probab=97.14 E-value=0.00088 Score=46.14 Aligned_cols=44 Identities=30% Similarity=0.345 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHH--------CCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 49989999999998--------799978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLAG--------DGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~a--------~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
T Consensus 616 ~LTDRQ~eaLqtAY~sGyFEwPR~sTGeElAesLgIS~pTfhqHLRaaerKL 667 (674)
T PRK13558 616 DLTDRQLTALQKAYVSGYFEWPRRAEGKQLAESMDIVPSTYHQHLQAAKQKL 667 (674)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 6049899999999864757788778789999870988388999999999999