HHsearch alignment for GI: 254780693 and conserved domain: PRK13719
>PRK13719 conjugal transfer transcriptional regulator TraJ; Provisional.
Probab=94.73 E-value=0.04 Score=34.34 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 989999999998799978999994999889999999999980799789999999976999
Q gi|254780693|r 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 175 T~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli 234 (235)
T Consensus 147 ~~~~~~vf~~Ys~G~SH~~ia~~L~It~~sSkn~~s~i~k~~gissrde~l~~l~~s~~~ 206 (220)
T PRK13719 147 TSIQYDVFILYSFGFSHNSIASLLNITNGSSKNKISEILKFFGISSRDELLIILHTSEMI 206 (220)
T ss_pred EEEEEEEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 200466898875242468899884741354077999999972988599999999997689