HHsearch alignment for GI: 254780693 and conserved domain: PRK13870

>PRK13870 transcriptional regulator TraR; Provisional.
Probab=100.00  E-value=3.1e-36  Score=277.51  Aligned_cols=215  Identities=20%  Similarity=0.156  Sum_probs=169.7

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEECC
Q ss_conf             25999999999999985837858998417778731025044227877899962487444120879999961799837310
Q gi|254780693|r   12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS   91 (235)
Q Consensus        12 ~sl~dl~~~l~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~   91 (235)
T Consensus        16 ~de~~~~~~l~~~a~~~gf~~~ayl~~--------~~~~~~~isnYP~eW~~~Y~~~~Y~~iDPVv~~a~~~~~Pf~Ws~   87 (234)
T PRK13870         16 GDECILKTGLADIAEHFGFTGYAYLHI--------QHRHITAVTNYHREWQSTYFDKKFDALDPVVKRARSRKHIFTWSG   87 (234)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCEEEEEE--------CCCCEEEEECCCHHHHHHHHHCCCEEECHHHHHHHCCCCCEEECC
T ss_conf             539999999999999839985798750--------799757872799999999998889030879998834898976087


Q ss_pred             HHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHH---HHHHHHHHHCCCCC
Q ss_conf             133146672136789965425855358997216887523454105887899899999999999---99999985124678
Q gi|254780693|r   92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRS  168 (235)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  168 (235)
T Consensus        88 ~~~~~~~~~~~r~f~~eA~~~Gl~~G~tiPi~~~~G~~~~lSlas~~~~~~~~~~~~~~~~~~~~~~~h~~~~~l~~~~~  167 (234)
T PRK13870         88 EQERPSLSKDERAFYAHAADFGIRSGITIPIKTANGSMSMFTLASEKPVIDLDREIDAVAAAATIGQIHARISFLRTTPT  167 (234)
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             65544348689999999998599966999888799998999981399842167889999999999999999986204888


Q ss_pred             -CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf             -874449989999999998799978999994999889999999999980799789999999976999
Q gi|254780693|r  169 -SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI  234 (235)
Q Consensus       169 -~~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli  234 (235)
T Consensus       168 ~~~~~~LT~RE~E~L~W~A~GKT~~EIA~ILgISe~TV~fHl~na~~KL~a~nr~qAVa~Ai~~gLI  234 (234)
T PRK13870        168 AEDAAWLDPKEATYLRWIAVGMTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI  234 (234)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf             8776679979999999997899899999997988999999999999995899899999999985899