HHsearch alignment for GI: 254780693 and conserved domain: PRK13870
>PRK13870 transcriptional regulator TraR; Provisional.
Probab=100.00 E-value=3.1e-36 Score=277.51 Aligned_cols=215 Identities=20% Similarity=0.156 Sum_probs=169.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEECC
Q ss_conf 25999999999999985837858998417778731025044227877899962487444120879999961799837310
Q gi|254780693|r 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 (235)
Q Consensus 12 ~sl~dl~~~l~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~ 91 (235)
T Consensus 16 ~de~~~~~~l~~~a~~~gf~~~ayl~~--------~~~~~~~isnYP~eW~~~Y~~~~Y~~iDPVv~~a~~~~~Pf~Ws~ 87 (234)
T PRK13870 16 GDECILKTGLADIAEHFGFTGYAYLHI--------QHRHITAVTNYHREWQSTYFDKKFDALDPVVKRARSRKHIFTWSG 87 (234)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEE--------CCCCEEEEECCCHHHHHHHHHCCCEEECHHHHHHHCCCCCEEECC
T ss_conf 539999999999999839985798750--------799757872799999999998889030879998834898976087
Q ss_pred HHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHH---HHHHHHHHHCCCCC
Q ss_conf 133146672136789965425855358997216887523454105887899899999999999---99999985124678
Q gi|254780693|r 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRS 168 (235)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 168 (235)
T Consensus 88 ~~~~~~~~~~~r~f~~eA~~~Gl~~G~tiPi~~~~G~~~~lSlas~~~~~~~~~~~~~~~~~~~~~~~h~~~~~l~~~~~ 167 (234)
T PRK13870 88 EQERPSLSKDERAFYAHAADFGIRSGITIPIKTANGSMSMFTLASEKPVIDLDREIDAVAAAATIGQIHARISFLRTTPT 167 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 65544348689999999998599966999888799998999981399842167889999999999999999986204888
Q ss_pred -CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf -874449989999999998799978999994999889999999999980799789999999976999
Q gi|254780693|r 169 -SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 169 -~~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli 234 (235)
T Consensus 168 ~~~~~~LT~RE~E~L~W~A~GKT~~EIA~ILgISe~TV~fHl~na~~KL~a~nr~qAVa~Ai~~gLI 234 (234)
T PRK13870 168 AEDAAWLDPKEATYLRWIAVGMTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 8776679979999999997899899999997988999999999999995899899999999985899