HHsearch alignment for GI: 254780693 and conserved domain: PRK13919

>PRK13919 putative RNA polymerase sigma E protein; Provisional.

Probab=97.99  E-value=2e-05  Score=57.86  Aligned_cols=45  Identities=31%  Similarity=0.449  Sum_probs=41.4

Q ss_pred             CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             499899999999-987999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       136 ~L~~~~r~vi~L~~~~g~s~~EIA~~L~is~~TVk~~l~rA~k~Lr  181 (187)
T PRK13919        136 ALSPEERRVIEVLYYQGYTHREAARLLGLPLGTLKTWARRALSKLK  181 (187)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             4999999999999985999999999989399999999999999999