HHsearch alignment for GI: 254780693 and conserved domain: TIGR01884
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein; InterPro: IPR010163 Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity..
Probab=96.84 E-value=0.003 Score=42.32 Aligned_cols=47 Identities=28% Similarity=0.336 Sum_probs=41.7
Q ss_pred CCCCCCCHHHHHHHHHHHC--C-CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8744499899999999987--9-997899999499988999999999998
Q gi|254780693|r 169 SAARNLTERETSCLQLAGD--G-YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 169 ~~~~~LT~RE~evL~l~a~--G-~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
T Consensus 162 ~~~~~~s~~~~~vL~~L~~~~Ge~~v~~iA~~lg~s~~T~~~~~~~Lek~ 211 (231)
T TIGR01884 162 PLLAGLSREELKVLEALKAEKGEKSVKNIAKKLGKSLSTISRHLAELEKK 211 (231)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 44678889999999998507880528779988578887999999988744