HHsearch alignment for GI: 254780693 and conserved domain: TIGR02959
>TIGR02959 SigZ RNA polymerase sigma factor, SigZ family; InterPro: IPR014304 This entry is a group of RNA polymerase sigma factors where one of the members is designated as SigZ in Bacillus subtilis . This group has a very sporadic distribution, B. subtilis, for instance, being the only sequenced strain of Bacilli with a member Dechloromonas aromatica (strain RCB), that appears to have two of these sigma factors. A member of which appears on a plasmid found in Photobacterium profundum SS9 and Vibrio fischeri (strain ATCC 700601 / ES114), where a second one is chromosomally encoded..
Probab=94.27 E-value=0.079 Score=32.22 Aligned_cols=44 Identities=32% Similarity=0.480 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 4998999999999-8799978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
T Consensus 100 ~LP~~~r~a~~L~el~G~sQ~e~A~kLGlSlSGaKSRVQRGR~~L 144 (170)
T TIGR02959 100 ELPDEYREAIRLTELEGLSQKEIAEKLGLSLSGAKSRVQRGRKKL 144 (170)
T ss_pred HCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 569867889888750799827998761753351567889999999