HHsearch alignment for GI: 254780693 and conserved domain: pfam02796
>pfam02796 HTH_7 Helix-turn-helix domain of resolvase.
Probab=93.78 E-value=0.12 Score=30.81 Aligned_cols=39 Identities=31% Similarity=0.469 Sum_probs=33.4
Q ss_pred CCCCH-HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 44998-9999999998799978999994999889999999
Q gi|254780693|r 172 RNLTE-RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 172 ~~LT~-RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~ 210 (235)
T Consensus 4 ~kl~~~~~~~v~~L~~~G~~i~~IA~~~~vsrsTvYRyl~ 43 (45)
T pfam02796 4 PKLNEEDINEVITLLEEGISIKQIAKIFGISRSTVYRYLA 43 (45)
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHCC
T ss_conf 1038999999999998799499999998600888876445