HHsearch alignment for GI: 254780693 and conserved domain: pfam02796

>pfam02796 HTH_7 Helix-turn-helix domain of resolvase.
Probab=93.78  E-value=0.12  Score=30.81  Aligned_cols=39  Identities=31%  Similarity=0.469  Sum_probs=33.4

Q ss_pred             CCCCH-HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf             44998-9999999998799978999994999889999999
Q gi|254780693|r  172 RNLTE-RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG  210 (235)
Q Consensus       172 ~~LT~-RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~  210 (235)
T Consensus         4 ~kl~~~~~~~v~~L~~~G~~i~~IA~~~~vsrsTvYRyl~   43 (45)
T pfam02796         4 PKLNEEDINEVITLLEEGISIKQIAKIFGISRSTVYRYLA   43 (45)
T ss_pred             CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHCC
T ss_conf             1038999999999998799499999998600888876445