HHsearch alignment for GI: 254780693 and conserved domain: pfam04297
>pfam04297 UPF0122 Putative helix-turn-helix protein, YlxM / p13 like. Members of this family are predicted to contain a helix-turn-helix motif, for example residues 37-55 in Mycoplasma mycoides p13. Genes encoding family members are often part of operons that encode components of the SRP pathway, and this protein may regulate the expression of an operon related to the SRP pathway.
Probab=94.73 E-value=0.11 Score=31.21 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 4998999999999-8799978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
T Consensus 17 LLT~KQ~~~~~lyy~eDlSL~EIAe~~~iSRQaV~D~ikR~~~~L 61 (101)
T pfam04297 17 LLTDKQKNYFELYYLDDLSLSEIAEEFNVSRQAVYDNIKRTEKML 61 (101)
T ss_pred HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 765999999999987639899999881985999999999999999