HHsearch alignment for GI: 254780693 and conserved domain: pfam04967
>pfam04967 HTH_10 HTH DNA binding domain.
Probab=97.35 E-value=0.00064 Score=47.12 Aligned_cols=43 Identities=37% Similarity=0.465 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHH--------CCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 9989999999998--------799978999994999889999999999980
Q gi|254780693|r 174 LTERETSCLQLAG--------DGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 174 LT~RE~evL~l~a--------~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
T Consensus 1 LT~rQ~evl~~A~~~GYfd~PR~~~l~elA~~lgis~sT~~~hLr~ae~ki 51 (53)
T pfam04967 1 LTDRQREILRLAYKMGYFDYPRRVTLKDLAKELGISKSTLSEHLRRAESKL 51 (53)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 988999999999986897788768899999996989999999999999987