HHsearch results for GI: 254780693 and protein with PDBid: 1tty_A

>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2

Probab=96.56  E-value=0.0045  Score=39.51  Aligned_cols=53  Identities=23%  Similarity=0.281  Sum_probs=46.4

Q ss_pred             CCCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             44998999999999-----879997899999499988999999999998079978999
Q gi|254780693|r  172 RNLTERETSCLQLA-----GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA  224 (235)
Q Consensus       172 ~~LT~RE~evL~l~-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qa  224 (235)
                      ..|++||++|+.+-     -..+|-.|||..||||..-|+..-+++.+||.-..+.+.
T Consensus        17 ~~L~~rE~~Vi~~rfGL~~~~~~Tl~eI~~~lgiSreRVRQie~~Al~kLr~~~~~~~   74 (87)
T 1tty_A           17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKY   74 (87)
T ss_dssp             TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHH
T ss_pred             HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             6499999999999807889996579999989598899999999999999867078899