HHsearch results for GI: 254780693 and protein with PDBid: 1u78_A
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=95.97 E-value=0.017 Score=35.49 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=26.2
Q ss_pred CCCCHHHH-HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 44998999-9999998799978999994999889999999
Q gi|254780693|r 172 RNLTERET-SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 172 ~~LT~RE~-evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~ 210 (235)
..||+-|+ +|..+..+|+|..+||..||+|..||...++
T Consensus 5 ~~lt~~~R~~I~~l~~~G~s~~~IAk~lg~s~stV~r~lk 44 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLK 44 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 8799999999999999799999999998957899999999