HHsearch results for GI: 254780693 and protein with PDBid: 1u78_A

>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=95.97  E-value=0.017  Score=35.49  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=26.2

Q ss_pred             CCCCHHHH-HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf             44998999-9999998799978999994999889999999
Q gi|254780693|r  172 RNLTERET-SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG  210 (235)
Q Consensus       172 ~~LT~RE~-evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~  210 (235)
                      ..||+-|+ +|..+..+|+|..+||..||+|..||...++
T Consensus         5 ~~lt~~~R~~I~~l~~~G~s~~~IAk~lg~s~stV~r~lk   44 (141)
T 1u78_A            5 SALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLK   44 (141)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             8799999999999999799999999998957899999999