HHsearch results for GI: 254780693 and protein with PDBid: 1yio_A
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.43 E-value=3.8e-13 Score=111.31 Aligned_cols=63 Identities=25% Similarity=0.281 Sum_probs=59.0
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 444998999999999879997899999499988999999999998079978999999997699
Q gi|254780693|r 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gl 233 (235)
...||+||.+|++++++|+||+|||..|++|++||++|++++++|||++||+|+|..|.+...
T Consensus 140 ~~~Lt~re~evl~ll~~g~~~~eIa~~l~iS~~TV~~h~~~i~~KL~~~~~~elv~~~~~~~~ 202 (208)
T 1yio_A 140 FSSLTGREQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHLVEKYES 202 (208)
T ss_dssp HHTSCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 232246899999999815649999997287689999999999998099999999999999731