PSIBLAST alignment of GI: 254780693 and protein with PDB id: 1l3l
>gi|21730643|pdb|1L3L|A Chain A, Crystal Structure Of A Bacterial Quorum-Sensing Transcription Factor Complexed With Pheromone And Dna Length = 234
>gi|21730644|pdb|1L3L|B Chain B, Crystal Structure Of A Bacterial Quorum-Sensing Transcription Factor Complexed With Pheromone And Dna Length = 234
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 39/222 (17%), Positives = 68/222 (30%), Gaps = 12/222 (5%)
Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76
L L I + +A I + I + NY D
Sbjct: 21 LKTGLADIADHFGFTGYAYLHIQH--------RHITAVTNYHRQWQSTYFDKKFEALDPV 72
Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136
+ S W E + + +GI P++ S
Sbjct: 73 VKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFXSXFTXAS 132
Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSE 192
+ ++ + I+A A + + R++ L +E + L+ G T E
Sbjct: 133 DKPVIDLDREIDAVAAAATIGQIHARISFLRTTPTAEDAAWLDPKEATYLRWIAVGKTXE 192
Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
EIA+ G+ ++V L A + D ++ A AIR I
Sbjct: 193 EIADVEGVKYNSVRVKLREAXKRFDVRSKAHLTALAIRRKLI 234