BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780693|ref|YP_003065106.1| transcriptional regulator
protein [Candidatus Liberibacter asiaticus str. psy62]
         (235 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780693|ref|YP_003065106.1| transcriptional regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 235

 Score =  483 bits (1244), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 235/235 (100%), Positives = 235/235 (100%)

Query: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60
           MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD
Sbjct: 1   MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60

Query: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120
           SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF
Sbjct: 61  SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120

Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180
           PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS
Sbjct: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180

Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235
           CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC
Sbjct: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235


>gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 246

 Score = 48.1 bits (113), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 33/57 (57%)

Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230
           LT RE  CL    +G TS+EIA  LG+S +TVN Y+ S   K     R  AIA A+R
Sbjct: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.138    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,199
Number of Sequences: 1233
Number of extensions: 5517
Number of successful extensions: 11
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 2
length of query: 235
length of database: 328,796
effective HSP length: 71
effective length of query: 164
effective length of database: 241,253
effective search space: 39565492
effective search space used: 39565492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)