HHsearch alignment for GI: 254780694 and conserved domain: COG1191

>COG1191 FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription].

Probab=96.00  E-value=0.021  Score=34.36  Aligned_cols=45  Identities=33%  Similarity=0.360  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             8897799999999-85999799999949998899999999999807
Q gi|254780694|r  185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       196 ~L~EREk~Vl~l~y~eelt~kEI~~~LgISes~VSql~kkai~kLr  241 (247)
T COG1191         196 PLPEREKLVLVLRYKEELTQKEIAEVLGISESRVSRLHKKAIKKLR  241 (247)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             6689999999999970157999999949149899999999999999